*: These authors have contributed equally to this work.
Peer-reviewed original articles
Jönsson ME, Brattås PL, Gustafsson C, Petri R, Yudovich D, Pircs K, Vershuere S, Madson S, Hansson J, Larsson J, Månsson R, Meissner A, Jakobsson J (2019) Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors Nature Communications
Petri R, Brattås PL, Sharma Y, Jönsson ME, Pircs K, Bengzon J, Jakobsson J (2019) LINE-2 transposable elements are a source of functional human microRNAs and target sites Plos Genetics
Kutsche LK, Gysi DM, Fallmann J, Lenk K, Petri R, Swiersy A, Klapper SD, Pircs K, Khattak S, Stadler PF, Jakobsson J, Nowick K, Busskamp V (2018) Combined Experimental and System-Level Analyses Reveal the Complex Regulatory Network of miR-124 during Human Neurogenesis Cell Systems
Pircs K, Petri R, Madsen S, Brattås PL, Vuono R, Ottosson RD, St-Amour I, Hersbach AB, Matusiak-Brückner M, Hult Lundh S, Petersén Å, Déglon N, Hébert SS, Parmar M, Barker AR, Jakobsson J (2018) Huntingtin aggregation impairs autophagy leading to Argonaute-2 accumulation and global microRNA dysregulation Cell Reports
In this paper we report that aggregation of the mutant huntingtin protein, a hallmark of Huntington’s disease proteinopathy, impairs macroautophagy leading to Argonaute-2 accumulation and global dysregulation of microRNAs. These results indicate that autophagy not only influences protein aggregation, but also directly contributes to the global alterations of post-transcriptional networks in Huntington’s disease. Press release; Article of the Year Award
Shrigley S, Pircs K, Barker AR, Parmar M, Drouin-Ouellet J (2018) Simple Generation of a High Yield Culture of Induced Neurons from Human Adult Skin Fibroblasts. J. Vis. Exp.
In this paper and video journal we describe a single vector-based method to generate induced neurons (iNs) from dermal fibroblasts obtained from adult human donors. Since the publishing date 5th February, 2018, the video has already been viewed over 2500 times. I was involved in all of the different experiments, the writing and also performed the FACS sorting chapter in the video. I would like to highlight that this paper has been published without the contribution of my current supervisor (Dr. Johan Jakobsson) during my Postdoc years.
Drouin-Ouellet J*, Lau S*, Brattås PL, Rylander Ottosson D, Pircs K, Grassi D, Collins ML, Vuono R, Sjöland AA, Westergren-Thorsson G, Graff C, Minthon L, Toresson H, Barker AR, Jakobsson J, Parmar M (2017) REST suppression mediates neural conversion of adult human fibroblasts via microRNA dependent and independent pathways EMBO Molecular Medicine.
In this paper we developed an optimized one-step method to efficiently reprogram adult human fibroblasts using a single-vector system. We also demonstrate that it is possible to obtain iNs of high yield and purity from aged individuals with a range of familial and sporadic neurodegenerative disorders including Parkinson's, Huntington's (HD), as well as Alzheimer's disease. I have performed all the relevant data using iNs derived from an HD patient after optimization of culture conditions. I have also helped in setting up and optimizing the iN purification experiments using FACS sorting.
Petri R, Pircs K, Jönsson ME, Akerblom M, Brattås PL, Klussendorf T, Jakobsson J. (2017) let-7 regulates radial migration of new-born neurons through positive regulation of autophagy. Embo Journal.
This paper is my first paper produced during my Postdoc years in Sweden, where I introduced autophagy to the group. I have designed, performed and analyzed all autophagy related experiments including TEM, immunostainings, rescue data with TFEB and Becn1. Altogether, we have revealed a miRNA-dependent link between autophagy and adult neurogenesis with implications for neurodegenerative diseases where these processes are impaired.
Takáts Sz, Varga Á, Pircs K, Juhász G. (2015) Loss of Drosophila Vps16A enhances autophagosome formation through reduced TOR activity Autophagy.
Takats Sz*, Pircs K*,Nagy P, Varga A, Karpati M, Hegedus K, Kramer H, Kovacs A, Sass M, Juhasz G. (2014) Interaction of the HOPS complex with Syntaxin 17 mediates autophagosome clearance in Drosophila Mol Biol Cell.
Nagy P, Hegedus K, Pircs K, Varga A, Juhasz G. (2014) Different effects of Atg2 and Atg18 mutations on Atg8a and Atg9 trafficking during starvation in Drosophila FEBS Letters.
Nagy P*, Karpati M*, Varga A, Pircs K, Venkei Zs, Takats Sz, Varga K, Erdi B, Hegedus K, Juhasz G. (2014) FIP200 promotes phagophore assembly at perilysosomal p62/Ref(2)P aggregates by activation of Atg1 in Drosophila Autophagy.
Nagy P, Pircs K, Varga A, Hegedus K, Juhász G. (2013) Myc-driven overgrowth requires unfolded protein response-mediated induction of autophagy and antioxidant responses in Drosophila melanogaster. PloS Genetics.
Low P*, Varga A*, Pircs K, Nagy P, Szatmari Zs, Sass M, Juhasz G. (2013) Impaired proteasomal degradation enhances autophagy via hypoxia signaling in Drosophila. BMC Cell Biology.
Takats Sz, Nagy P, Varga A, Pircs K, Karpati M, Varga K, Kovacs A, Hegedus K, Juhasz G. (2013) Autophagosomal Syntaxin17-dependent lysosomal degradation maintains neuronal function in Drosophila. J Cell Biol.
This paper is my most cited one (112 cites) where we revealed the molecular mechanism underlying autophagosomal fusion events and show that lysosomal degradation and recycling of sequestered autophagosome content is crucial to maintain proper functioning of the nervous system. I performed in this project all of the immunostainings and analyzed the microscopy data and performed statistical analysis too.
Pircs K, Nagy P, Varga A, Venkei Z, Erdi B, Hegedus K, Juhasz G. (2012) Advantages and limitations of different p62-based assays for estimating autophagic activity in Drosophila. PloS One.
This paper is the first of my first author papers. We compared different experimental approaches for using p62 assays in Drosophila larvae. We produced a p62 antibody in-house, which has been highly cited and commonly used in the fly field ever since. We have also highlighted the advantages and limitations of commonly used p62 assays, which have been applicable also to other cells and organisms used in autophagy research.
Erdi B, Nagy P, Zvara A, Varga A, Pircs K, Menesi D, Puskas LG, Juhasz G. (2012) Loss of the starvation-induced gene Rack1 leads to glycogen deficiency and impaired autophagic responses in Drosophila. Autophagy.
Research review articles
Pircs K*, Petri R*, Jakobsson J (2018) Crosstalk between MicroRNAs and Autophagy in Adult Neurogenesis: Implications for Neurodegenerative Disorders Brain Plasticity
Drouin-Ouellet J*, Pircs K*, Barker AR, Jakobsson J, Parmar M (2017) Direct neuronal reprogramming for disease modeling studies using patient-derived neurons: What have we learned? Frontiers in Neuroscience
Here we reviewed published literature on the work that has been undertaken using induced neurons (iNs) to model human brain disorders. As disease-modelling studies using direct neuronal reprogramming approach are becoming more widely adopted, we also define the criteria that are used to define the iNs, especially in relation to the extent to which they are mature adult neurons.